We study how motile cells can reverse their polarity when exposed to changing stimuli, using mathematical modeling alongside extensive experimental data from optogenetic assays carried out by our collaborators in the Orion Weiner lab (UCSF). These experiments revealed an unexpected phenomenon: when a localized input is followed by a global stimulus, cells often reverse their direction of turning. To explain this, our collaborators hypothesized the existence of a slow-acting, locally produced inhibitor downstream of Rac, a signaling molecule known to promote actin assembly and front-edge protrusion. We test this idea by adapting an existing reaction diffusion model that, under certain conditions, produces a stable spatial pattern: a polarized distribution with a clear front and back. This modeling framework, often referred to as wave-pinning, has not previously been fitted directly to experimental data. Here, we calibrate the model’s reaction terms to time-dependent Rac activity data, introducing a novel approach that embraces cellular heterogeneity by fitting a distribution of parameters across multiple cells. While the Rac-inhibitor circuit captures several key features of the response, it fails to reproduce reversal. Incorporating PIP3, an upstream regulator of Rac, allows the model to recover reversal dynamics and reproduce the full range of observed behaviours. In this presentation, we will show the development of our modeling framework from its earliest steps, including how data fitting informed model refinement. Our results validate the experimental hypothesis and yield new predictions about the molecular timing and feedback logic underlying flexible polarity control.
Minisymposia: MS07
Thursday, July 17 at 3:50pm
Minisymposia: MS07
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CDEV-02
Mechanistic modeling from inter- to intra-cellular phenomena
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CDEV-02
Organized by: Andreas Buttenschoen (University of Massachusetts Amherst), Calina Copos (Northeastern University)
- Jupiter Algorta University of British Columbia "A Data-Driven Model of Polarity Reversal in Migrating Cells"
- Mariya Savinov New York University "Modeling mechanically driven tumor cluster coattraction on ECM"
- Wei Wang Johns Hopkins University "Statistics of fracture in collective cell migration"
- Eric Cytrynbaum University of British Columbia " A model for root zone regulation by brassinosteroid and CLASP"
Timeblock: MS07
CDEV-03
(Part 2)
From data to mechanisms: advancement in modeling in cell and developmental biology
Timeblock: MS07
CDEV-03
(Part 2)
Organized by: Keisha Cook, Anna Nelson (Clemson University), Alessandra Bonfanti (Politecnico di Milano) Giulia Celora (University of Oxford) Kelsey Gasior (University of Notre Dame) Qixuan Wang (University of California, Riverside)
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- Merlin Pelz University of Minnesota "Effect of compartmentalization: synchronization and symmetry-breaking of diffusively coupled cells in 2-D and 3-D"
- Sharon Lubkin North Carolina State University "Geometry, pattern, and mechanics of notochords"
- Anna Nelson University of New Mexico "Modeling mechanisms of microtubule growth and nucleation in living neurons"
- Julio Belmonte North Carolina State University "Brillouin Microscopy and Physical Modelling Reveal the Role of Dynamic Changes in Cell Material Properties During Gastrulation"
Timeblock: MS07
CDEV-06
(Part 2)
Modeling the Role of Geometry and Topology in Shaping Cell Behavior, Function, and Tissue Patterns
Timeblock: MS07
CDEV-06
(Part 2)
Organized by: Fabian Spill (University of Birmingham), Anotida Madzvamuse, University of British Columbia
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- Gulsemay Yigit The University of British Columbia "Reaction-Diffusion Systems in Bilayer Geometries with Variable Width"
- Maryam Parvizi University of Birmingham "A Mathematical Energy-Based Framework for Modeling Single-Cell Epithelial Migration"
- Stephanie Portet University of Manitoba "Transport of intermediate filaments in cells"
- Vijay Rajagopal The University of Melbourne "MitoMimics: Synthetic microscopy timelapse data for zero-annotation AI segmentation and tracking of mitochondrial dynamics"
Timeblock: MS07
ECOP-02
(Part 1)
Advances in Spatial Ecological and Epidemiological Modeling and Analysis
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ECOP-02
(Part 1)
Organized by: Daozhou Gao (Cleveland State University), Xingfu Zou, University of Western Ontario
Note: this minisymposia has multiple sessions. The other session is: and Part-2.
- Sebastian Schreiber University of California, Davis "Impacts of the Tempo and Mode of Environmental Fluctuations on Population Growth"
- Adrian Lam Ohio State University "Can Spatial Heterogeneity Alone Lead to Selection for Dispersal?"
- Yijun Lou The Hong Kong Polytechnic University "Dynamics of a Reaction-diffusion System with Time-periodic and Spatially Dependent Delay: A Quotient Space Approach"
- Chunyi Gai University of Northern British Columbia "Resource-mediated Competition between Two Plant Species with Different Rates of Water Intake"
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ECOP-03
Eco-evolutionary Dynamics of Bacteriophage
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ECOP-03
Organized by: Joshua S. Weitz (University of Maryland, Department of Biology & Physics and U of Maryland Institute for Health Computing), Asher Leeks, University of British Columbia, Department of Zoology
- Antoni Luque University of Miami "Impact and prediction of phage decay in natural microbial communities"
- Asher Leeks University of British Columbia "Modelling the dynamics of cheating in natural populations of filamentous phages"
- Jaye Sudweeks University of British Columbia "Environmental feedback can maintain cooperation in phages"
- Nanami Kubota University of Pittsburgh "Cheater phages drive bacterial and phage populations to lower fitness"
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ECOP-06
Coupled human and natural systems
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ECOP-06
Organized by: Frank M. Hilker (Osnabrück University), Rebecca C. Tyson (University of British Columbia Okanagan)
- Brian Beckage University of Vermont "Why We Do What We Do: A Mathematical Framework for Modeling Human Behavior in Coupled Human-Environmental Systems"
- Jonas Wahl Osnabrück University, Germany "Evolutionary dynamics of constant and proportional harvest strategies in a coupled human-environment system with dynamic resources"
- Amrita Punnavajhala University of Waterloo "Region-level mitigation in a coupled social-climate model"
- Christina A. Cobbold University of Glasgow "Mathematics for Rewilding: opportunities and challenges"
Timeblock: MS07
ECOP-07
(Part 2)
Exploring Heterogeneity in Mathematical Models: Methods, Applications, and Insights
Timeblock: MS07
ECOP-07
(Part 2)
Organized by: Zhisheng Shuai (University of Central Florida), Junping Shi, College of William & Mary; Yixiang Wu, Middle Tennessee State University
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, and Part-3.
- Tingting Tang San Diego State University "Exploring the impact of household size on COVID-19 with coupled SEAIR mode"
- Collin Kilmer University of Tennessee at Chattanooga "Modeling Zoonotic Disease Transmission Under the Impact of Land Use Change"
- Han Lu University of Alberta "Analysis of a diffusive host-pathogen epidemic model with two-stage mechanism in a spatially heterogeneous environment"
- Sameras Pal University of Kalyani, India "The impact of microbial diseases of corals under macroalgal toxicity, overfishing and rising sea surface temperature (SST)"
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MFBM-07
(Part 2)
Stochastic Methods for Biochemical Reaction Networks
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MFBM-07
(Part 2)
Organized by: Hye-Won Kang (University of Maryland Baltimore County), Arnab Ganguly, Louisiana State University, aganguly@lsu.edu
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, and Part-3.
- Joshua McGinnis University of Pennsylvania "Homogenization of a Spatially Extended, Stochastic Ion Channel Model"
- Radek Erban University of Oxford "Chemical Reaction Networks: Systematic Design, Limit Cycles and Spatio-Temporal Modelling"
- David Lipshutz Baylor College of Medicine "Methods for Comparing Sensitivities of Stochastic Neural Networks"
- TBA TBA "TBA"
Timeblock: MS07
MFBM-09
(Part 3)
Probability & stochastic processes in biology: models, methods, and community
Timeblock: MS07
MFBM-09
(Part 3)
Organized by: Jinsu Kim (POSTECH), Eric Foxall (The University of British Columbia - Okanagan Campus), and Linh Huynh (Dartmouth College)
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, Part-2, and Part-4.
- Hwai-Ray Tung University of Utah "Extreme first passage times with fast immigration"
Timeblock: MS07
MFBM-17
(Part 3)
Immune Digital Twins: Mathematical and Computational Foundations
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MFBM-17
(Part 3)
Organized by: Tomas Helikar (University of Nebraska - Lincoln), Juilee Thakar (Juilee_Thakar@URMC.Rochester.edu) - University of Rochester Medical Center James Glazier (jaglazier@gmail.com) - Indiana University
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, and Part-2.
- Juilee Thakar University of Rochester "Monocyte digital twin and HIV associated vascular disease"
- Esteban Hernandez Vargas University of Idaho "Adaptive Observers in Digital Twins for Drug Resistance Mitigation in HIV"
- Heber L. Rocha Indiana University "Multiscale Modeling of Immune Surveillance for Cancer Patient Digital Twins"
- Gary An University of Vermont "NASEM-compliant Critical Illness Digital Twins to cure sepsis"
Timeblock: MS07
ONCO-05
Immune responses to cancer: from mathematics to clinics
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ONCO-05
Organized by: Raluca EFTIMIE (University of Marie & Louis Pasteur, France), Dumitru TRUCU, University of Dundee, UK
- 1. Marom Yosef*, Svetlana Bunimovich Ariel University "Mathematical Models to Improve Bladder Cancer Therapies"
- Haralampos Hatzikirou: Khalifa University "From cell patterns in biopsies to clinical predictions"
- Ali Daher University of Marie & Louis Pasteur "Integrating High-Throughput Genomic Data with Biologically-Informed Models of Spatiotemporal Dynamics of Skin Lesions: A Computational Parameter Extraction Pipeline"
- Donggu Lee(*,1), Sunju Oh(2), Sean Lawler(3), and Yangjin Kim (1,3) (1) Konkuk University, (2) Konkuk University, (3) Brown University "Bistable dynamics of TAN-NK cells in tumor growth and control of radiotherapy-induced neutropenia in lung cancer treatment"
Timeblock: MS07
ONCO-08
(Part 2)
Decoding Drug-Induced Persistence: Experiments, Models, and Optimal Drug Scheduling
Timeblock: MS07
ONCO-08
(Part 2)
Organized by: Einar Bjarki Gunnarsson (Science Institute, University of Iceland), Maximilian Strobl (Cleveland Clinic, USA, stroblm@ccf.org)
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- Jana Gevertz The College of New Jersey "Mitigating non-genetic resistance to checkpoint inhibition based on multiple states of exhaustion"
- Raymond Ng University of Pennsylvania "The role of tumor gene expression variability in evading CD8+ T cells"
- Chenyu Wu University of Minnesota "A statistical framework for detecting therapy-induced resistance from drug screens"
- Michael Cotner The University of Texas at Austin "Tracking Resistance to Targeted Therapy in TNBC with Cell Barcodes"
Timeblock: MS07
ONCO-09
Mathematical Modeling of the Tumor-Immune Microenvironment to Advance Immunotherapeutic Strategies
Timeblock: MS07
ONCO-09
Organized by: Tyler Simmons (Therapy Modeling and Design Center, University of Minnesota), John Metzcar and Sarah Anderson: Therapy Modeling and Design Center, University of Minnesota
- Gabriel Côté Sainte-Justine University Hospital Azrieli Research Centre / Université de Montréal "The role of chronobiology on immunotherapies to prevent neutrophil infiltration into the tumour microenvironment in lung cancer"
- Jason T. George, MD, PhD Texas A&M University "Stochastic modeling of immunomodulation in the tumor-immune microenvironment"
- Riley Manning University of Minnesota "Agent-based modeling of glioblastoma immunotherapy strategies"
- Katherine Owens Fred Hutchinson Cancer Center, Seattle, WA "Spatiotemporal dynamics of tumor - CAR T-cell interaction following local administration in solid cancers"
Timeblock: MS07
OTHE-03
(Part 1)
Recent perspectives on mathematical-biology education
Timeblock: MS07
OTHE-03
(Part 1)
Organized by: Stacey Smith? (The University of Ottawa)
Note: this minisymposia has multiple sessions. The other session is: and Part-2.
- Kathleen Hoffman University of Maryland, Baltimore County "Improvement of Quantitative Reasoning Skills in Transfer and Direct Entry Students Exposed to Cell Biology Modules"
- Stacey Smith? The University of Ottawa "To pre-record or not to pre-record? Lessons learned from video instruction in a flipped classroom"
- Angela Peace Texas Tech University "Teaching Mathematical Ecology across the disciplines"
- Rebecca Everett Haverford College "Building an Applied Track at a Small Liberal Arts College: A Work in Progress"
Timeblock: MS07
OTHE-08
(Part 1)
Quantitative Systems Pharmacology: Linking mathematical biology to model informed drug development (MIDD) - Pharmacometrics Subgroup
Timeblock: MS07
OTHE-08
(Part 1)
Organized by: Marissa Renardy (Quantitative Systems Pharmacology, GSK), Kathryn G. Link, Quantitative Systems Pharmacology, Pfizer Inc.
Note: this minisymposia has multiple sessions. The other session is: and Part-2.
- Christian T. Michael University of Michigan - Michigan Medicine "Regimen-ranking methodology influences outcomes in a multi-scale systems pharmacology model of tuberculosis treatment."
- Olivia Walch Arcascope "Better drug discovery through circadian science: theoretical considerations for chronomedicine."
- Kathryn G. Link Pfizer Inc. "Virtual Clinical Trial Simulations Using a Quantitative Systems Pharmacology (QSP) Model of Antibody Drug Conjugate (ADC) Therapy in Patients with HER2- positive and HER2-low metastatic breast cancer."
- Morgan Craig Universite de Montreal "Targeting tumour-associated macrophages and microglia in glioblastoma"