Cell polarization, in which a uniform distribution of substances becomes asymmetric due to internal or external stimuli, is a fundamental process underlying cell mobility and cell division. Budding yeast provides a good system to study how biochemical signals and mechanical properties coordinate with each other to achieve stable cell polarization and give rise to certain morphological change in a single cell. Recent experimental data suggests yeast budding develops into two trajectories with different bud shapes as mother cells become old. We first developed a 2D model to simulate biochemical signals on a shape-changing cell and investigated strategies for robust yeast mating. Then we extended and coupled this biochemical signaling model with a 3D subcellular element model to take into account cell mechanics, which was applied to investigate how the interaction between biochemical signals and mechanical properties affects the cell polarization and budding initiation. This 3D mechanochemical model was also applied to predict mechanisms underlying different bud shape formation due to cellular aging.
Methods for Biological Modeling Subgroup (MFBM)
Ad hoc subgroup meeting room(reserved for subgroup activities):TBD
Jump to:
Sub-group minisymposia
Timeblock: MS01
MFBM-05
(Part 1)
Data-driven modeling in biology and medicine
Timeblock: MS01
MFBM-05
(Part 1)
Organized by: Kang-Ling Liao (University of Manitoba), Wenrui Hao, Pennsylvania State University
Note: this minisymposia has multiple sessions. The other session is: and Part-2.
- Weitao Chen University of California, Riverside "A Mechanochemical Coupled Model to Understand Budding Behavior in Aging Yeast"
- Harsh Jain University of Minnesota Duluth "Looking Beyond Data: Simulating Treatment Outcomes for Unobserved Heterogeneous Populations Using Preclinical Insights"
- Leili Shahriyari University of Massachusetts Amherst "Data Driven QSP Modeling of Cancer: A Step Toward Personalized Treatment"
- Nourridine Siewe Rochester Institute of Technology "Osteoporosis Induced by Cellular Senescence: A Mathematical model"
Timeblock: MS01
MFBM-13
(Part 1)
Modern methods in the data-driven modeling of biological systems
Timeblock: MS01
MFBM-13
(Part 1)
Organized by: Cody FitzGerald (Northwestern University), Rainey Lyons (CU Boulder), Nora Heitzman-Breen (CU Boulder), Susan Rogowski (NCSU)
Note: this minisymposia has multiple sessions. The other sessions are: Part-2, Part-3, and Part-4.
Note: this minisymposia has been accepted, but the abstracts have not yet been finalized.
Timeblock: MS01
MFBM-14
(Part 1)
Multicellular Agent-Based Modelling - The OpenVT Project
Timeblock: MS01
MFBM-14
(Part 1)
Organized by: James Osborne (University of Melbourne), James Glazier (Indiana University) Yi Jiang (Georgia State University)
Note: this minisymposia has multiple sessions. The other sessions are: Part-2, and Part-3.
- Yi Jiang Georgia State University, USA "Multicellular Modelling of Collective Cancer Invasion"
- Jupiter Algorta University of British Columbia, CANADA "Simulating Cell Decisions and Embryo Structure with Morpheus"
- Andreas Buttenschoen University of Massachusetts, USA "Robust Numerical Methods for cells invading extracellular matrix: Adaptive Time-stepping and preconditioning for reproducible multicellular models"
- Rajendra Singh Negi Syracuse University, USA "Multicellular modeling of how myosin localization impacts symmetry-breaking in zebrafish embryonic development"
Timeblock: MS02
MFBM-10
(Part 1)
Flow-Kick Dynamics in Population Biology: Bridging Continuous and Discrete Processes
Timeblock: MS02
MFBM-10
(Part 1)
Organized by: Sebastian Schreiber (University of California, Davis)
Note: this minisymposia has multiple sessions. The other session is: and Part-2.
- Alanna Hoyer-Leitzel Mount Holyoke College "Resilience to reinfection in an impulsive model of viral exposure"
- Jakob Kaare-Rasmussen University of California, Davis "Habitat Destruction and Disturbance in Forest Ecosystems"
- Vanja Dukic University of Colorado "Weak-form inference for hybrid dynamical systems in ecology"
- Punit Gandhi Virginia Commonwealth University "The impact of rainfall variability on pattern formation in a flow-kick model for dryland vegetation bands"
Timeblock: MS02
MFBM-13
(Part 2)
Modern methods in the data-driven modeling of biological systems
Timeblock: MS02
MFBM-13
(Part 2)
Organized by: Cody FitzGerald (Northwestern University), Rainey Lyons (CU Boulder), Nora Heitzman-Breen (CU Boulder), Susan Rogowski (NCSU)
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, Part-3, and Part-4.
Note: this minisymposia has been accepted, but the abstracts have not yet been finalized.
Timeblock: MS02
MFBM-14
(Part 2)
Multicellular Agent-Based Modelling - The OpenVT Project
Timeblock: MS02
MFBM-14
(Part 2)
Organized by: James Osborne (University of Melbourne), James Glazier (Indiana University) Yi Jiang (Georgia State University)
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, and Part-3.
- Claire Miller Auckland Bioengineering Institute, NEW ZEALAND "Multicellular modelling of endometrial cell invasion in endometriosis lesion onset"
- Paul Macklin Indiana University, USA "Intuitive code-free tissue modeling in the cloud with PhysiCell"
- Steve Runser ETH Zurich, SWITZERLAND "PolyHoop & SimuCell3D: Efficient and Versatile Tissue Simulations in 2D and 3D"
Timeblock: MS03
MFBM-02
Bayesian Applications in Mathematical Biology
Timeblock: MS03
MFBM-02
Organized by: Daniel Glazar (Moffitt Cancer Center & Research Institute), Renee Brady-Nicholls, Moffitt Cancer Center & Research Institute
- Franz Kuchling Allen Discovery Center, Tufts University "Uncertainty Minimization as an Adaptive and Evolutionary Imperative in Biology"
- Nathanaël Hozé Université Paris Cité, INSERM, IAME, F-75018, Paris, France "A multi-scale modelling framework to assess the relationship between SARS-CoV-2 viral load and transmission in household studies"
- Kathleen Wilkie Toronto Metropolitan University "Practical Parameter Identifiability and Handling of Censored Data with Bayesian Inference in Models of Tumour Growth"
- Ernesto A. B. F. Lima The University of Texas at Austin "Modeling tumor sensitivity and resistance: a bayesian framework for predicting combination therapies"
Timeblock: MS03
MFBM-03
(Part 1)
Methods for whole cell modelling
Timeblock: MS03
MFBM-03
(Part 1)
Organized by: Jennifer Flegg (University of Melbourne), Prof Mat Simpson, Queensland University of Technology
Note: this minisymposia has multiple sessions. The other session is: and Part-2.
- Ruth Baker University of Oxford "Optimal experimental design for parameter estimation in the presence of observation noise"
- Yong See Foo University of Melbourne "Quantifying structural uncertainty in chemical reaction network inference"
- Michael Pan The University of Melbourne "Thermodynamic modelling of membrane transport processes using bond graphs"
- Jean (Jiayu) Wen The Australian National University "Advancing Genomic Foundation Models with Electra-Style Pretraining: Efficient and Interpretable Insights into Gene Regulation"
Timeblock: MS03
MFBM-06
Using Sensitivity Analysis and Uncertainty Quantification to Develop or Improve Biomathematical Models
Timeblock: MS03
MFBM-06
Organized by: Kelsey Gasior (University of Notre Dame)
- Samuel Oliver Swansea University "The role of EMT in Ovarian Cancer: Insights from a Mathematical Model"
- Nate Kornetzke University of New Mexico "Turn down that noise! Uncertainty quantification for stochastic models of emerging infectious pathogens"
- Steve Williams University of California, Merced "Examining models of phenotype selection in populations of bacteria under external predatory stress"
- Kelsey Gasior University of Notre Dame "Comparative Sensitivity Analyses and Modeling the Epithelial Mesenchymal Transition"
Timeblock: MS03
MFBM-09
(Part 1)
Probability & stochastic processes in biology: models, methods, and community
Timeblock: MS03
MFBM-09
(Part 1)
Organized by: Jinsu Kim (POSTECH), Eric Foxall (The University of British Columbia - Okanagan Campus), and Linh Huynh (Dartmouth College)
Note: this minisymposia has multiple sessions. The other sessions are: Part-2, Part-3, and Part-4.
- Jinsu Kim POSTECH "Stability of stochastic biochemical reaction networks"
- Daniel Schultz Dartmouth College "Emergence of heterogeneity during bacterial antibiotic responses"
- Anna Kraut St. Olaf College "Evolution across fitness valleys in a changing environment"
- Eric Foxall UBC Okanagan "Perturbation theory of reproductive value for branching Markov processes"
Timeblock: MS03
MFBM-17
(Part 1)
Immune Digital Twins: Mathematical and Computational Foundations
Timeblock: MS03
MFBM-17
(Part 1)
Organized by: Tomas Helikar (University of Nebraska - Lincoln), Juilee Thakar (Juilee_Thakar@URMC.Rochester.edu) - University of Rochester Medical Center James Glazier (jaglazier@gmail.com) - Indiana University
Note: this minisymposia has multiple sessions. The other sessions are: Part-2, and Part-3.
- Elsje Pienaar Purdue University "Patient-specific Immuno-profiles in Mechanistic Models: CD8+ T cell Exhaustion in children with perinatal HIV"
- James A. Glazier Indiana University, Bloomington "Medical Digital Twins: Addressing Simulation Equivalence Challenges in Virtual-Tissue Models"
- Hana Dobrovolny Texas Christian University "Incorporating the immune response into models of oncolytic virus treatment of cancer"
- Jason E. Shoemaker University of Pittsburgh "Network representation of sex-specific immunity: A steppingstone to digital twins?"
Timeblock: MS04
MFBM-04
Interaction laws to collective behaviour: Inferring population dynamics
Timeblock: MS04
MFBM-04
Organized by: Rebecca Crossley, Stéphanie Abo (University of Oxford), University of Oxford
- John Nardini The College of New Jersey "Decoding agent-based model behavior: novel methods for prediction and global sensitivity analysis"
- Jinchao Feng Great Bay University "A Sparse Bayesian Learning Algorithm for Estimation of Interaction Kernels in Motsch-Tadmor Model"
- Seungwoong Ha Santa Fe Institute "Toward a Data-Centric Understanding of Collective Dynamics"
- Ming Guo Massachusetts Institute of Technology "Collective curvature sensing and fluidity in three-dimensional multicellular systems"
Timeblock: MS04
MFBM-05
(Part 2)
Data-driven modeling in biology and medicine
Timeblock: MS04
MFBM-05
(Part 2)
Organized by: Kang-Ling Liao (University of Manitoba), Wenrui Hao, Pennsylvania State University
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- Kang-Ling Liao University of Manitoba "Mathematical Modeling of Breast Cancer Treatment with Radiation, Anti-estrogen, and Immune Checkpoint Inhibitor"
- Tracy Stepien University of Florida "Modeling Tumor-Immune Interactions in the Glioblastoma Microenvironment"
- Wenrui Hao Pennsylvania State University "Data-Driven Modeling in Alzheimer's Disease"
- Negar Mohammadnejad University of Alberta "Strategies for Optimizing the Efficacy of Oncolytic Virus–Immune System Interactions"
Timeblock: MS04
MFBM-15
Calibrating and Relating agent based models to spatial data
Timeblock: MS04
MFBM-15
Organized by: Sydney Ackermann, Ramanarayanan Kizhuttil, Samrat Sohel Mondal (Wodarz lab) (University of California, San Diego)
Note: this minisymposia has been accepted, but the abstracts have not yet been finalized.
Timeblock: MS04
MFBM-18
(Part 1)
Geometrical and Topological Methods for Data-Driven Modeling
Timeblock: MS04
MFBM-18
(Part 1)
Organized by: Dhananjay Bhaskar (Yale University), Bernadette Stolz-Pretzer
Note: this minisymposia has multiple sessions. The other session is: and Part-2.
- Katherine Benjamin University of Oxford "Topological methods for subcellular spatial transcriptomics"
- Veronica Ciocanel Duke University "Unraveling aster and ring structures in cell models of dynamic actin filaments using topological data analysis"
- Robert McDonald University of Oxford "Topological model selection: a case-study in tumour-induced angiogenesis"
- Nan Wu University of Texas at Dallas "Adaptive Bayesian regression on manifold"
Timeblock: MS05
MFBM-07
(Part 1)
Stochastic Methods for Biochemical Reaction Networks
Timeblock: MS05
MFBM-07
(Part 1)
Organized by: Hye-Won Kang (University of Maryland Baltimore County), Arnab Ganguly, Louisiana State University, aganguly@lsu.edu
Note: this minisymposia has multiple sessions. The other sessions are: Part-2, and Part-3.
- Ruth J Williams University of California San Diego "Stochastic Analysis of Markov Chain Models for Chromatin Dynamics"
- Grzegorz Rempala Ohio State University "Likelihood Functions for Individual-Level Chemical Reaction Models"
- Mark Flegg Monash University "Stochastic Simulation of Reaction Networks with Well-Mixed Clustered Agents"
- Hye-Won Kang University of Maryland Baltimore County "Multiscale Approximation and Parameter Estimation in Stochastic Models of the Glycolytic Pathway"
Timeblock: MS05
MFBM-13
(Part 3)
Modern methods in the data-driven modeling of biological systems
Timeblock: MS05
MFBM-13
(Part 3)
Organized by: Cody FitzGerald (Northwestern University), Rainey Lyons (CU Boulder), Nora Heitzman-Breen (CU Boulder), Susan Rogowski (NCSU)
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, Part-2, and Part-4.
Note: this minisymposia has been accepted, but the abstracts have not yet been finalized.
Timeblock: MS05
MFBM-16
Mathematical Modelling in Disease and Therapy: Integrating Quantitative Frameworks for Deeper Insights
Timeblock: MS05
MFBM-16
Organized by: Maria Kleshnina (Queensland University of Technology), Mason Lacy (Queensland University of Technology), Luke Filippini (Queensland University of Technology)
- Luke Filippini Queensland University of Technology "Data-informed stochastic frameworks of anisotropic movement in the brain"
- Moriah Echlin Tampere University "Using Single-Cell Data-driven Boolean Network Models to Analyze Prostate Cancer Progression"
- Louise Spekking TU Delft "Improving cancer therapy through migrastatics and estimating tumor composition"
- Noa Levi University of Melbourne "Leveraging algebraic approaches to inform therapeutic intervention"
Timeblock: MS06
MFBM-01
Emerging trends in quantitative pharmacometric modelling
Timeblock: MS06
MFBM-01
Organized by: Stuart Johnston (The University of Melbourne), Matthew Faria
Note: this minisymposia has been accepted, but the abstracts have not yet been finalized.
Timeblock: MS06
MFBM-08
(Part 1)
Mathematical methods for biological shape data analysis
Timeblock: MS06
MFBM-08
(Part 1)
Organized by: Wenjun Zhao (UBC/Wake Forest University), Khanh Dao Duc (UBC)
Note: this minisymposia has multiple sessions. The other session is: and Part-2.
- Ben Cardoen University of Birmingham "Shape discovery of functional interaction between proteins and organelles in the presence of weak oracle distances in superresolution microscopy"
- Ashok Prasad Colorado State University "Static Shapes and Dynamic Networks: Morphological Analysis of Cellular Identity"
- Felix Zhou UT Southwestern "Methods to identify causal links between morphology and cell signaling"
- Joe Kileel UT Austin "Method of moments for determining macromolecular shapes in cryo-EM"
Timeblock: MS06
MFBM-09
(Part 2)
Probability & stochastic processes in biology: models, methods, and community
Timeblock: MS06
MFBM-09
(Part 2)
Organized by: Jinsu Kim (POSTECH), Eric Foxall (The University of British Columbia - Okanagan Campus), and Linh Huynh (Dartmouth College)
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, Part-3, and Part-4.
- Ellen Baake Bielefeld University "Evolving genealogies in cultural evolution"
- Linh Huynh Dartmouth College "Spin glass model for Large Language Models and evolution"
- Samuel Isaacson Boston University "Coarse-grained limits of particle-based stochastic reactive-transport models"
- Clément Soubrier University of British Columbia "Modeling the meiotic spindle using a spatial birth-death process."
Timeblock: MS06
MFBM-11
Women in Mathematical Biology
Timeblock: MS06
MFBM-11
Organized by: Margherita Maria Ferrari (University of Manitoba), Daniel Cruz, University of Florida
- Stacey Smith? The University of Ottawa "The implications of micro-host--pathogen co-evolutionary outcomes on macro-epidemics"
- Morgan Craig Université de Montréal "Age-related variability in antibody responses to the mRNA COVID-19 vaccine primary series"
- Chris Soteros University of Saskatchewan "Lattice polygon models of DNA topology"
- Margherita Maria Ferrari University of Manitoba "Discrete models for DNA-RNA complexes"
Timeblock: MS06
MFBM-12
Methods and applications of data informed agent-based models for systems biology
Timeblock: MS06
MFBM-12
Organized by: Annequa Sundus (Indiana University Bloomington), Elmar Bucher (Indiana University Bloomington), Paul Macklin (Indiana University Bloomington)
- Harsh Jain University of Minnesota Duluth "The SMoRe-verse: A novel method for ABM parametrization and uncertainty quantification"
Timeblock: MS06
MFBM-17
(Part 2)
Immune Digital Twins: Mathematical and Computational Foundations
Timeblock: MS06
MFBM-17
(Part 2)
Organized by: Tomas Helikar (University of Nebraska - Lincoln), Juilee Thakar (Juilee_Thakar@URMC.Rochester.edu) - University of Rochester Medical Center James Glazier (jaglazier@gmail.com) - Indiana University
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, and Part-3.
- Yi Jiang Georgia State University "Immunogenic Cell Death: The Key to Unlocking the Potential for Combined Radiation and Immunotherapy"
- Josh Loecker University of Nebraska-Lincoln "Adaptive Analysis of Mechanistic Models using Large Language Models"
- Reinhard Laubenbacher University of Florida "Immune Digital Twins: Foundational Mathematical Challenges"
- Gary An University of Vermont "Curing sepsis with the Critical Illness Digital Twin: An example of the benefit of having a NASEM-compliant Digital Twin"
Timeblock: MS07
MFBM-07
(Part 2)
Stochastic Methods for Biochemical Reaction Networks
Timeblock: MS07
MFBM-07
(Part 2)
Organized by: Hye-Won Kang (University of Maryland Baltimore County), Arnab Ganguly, Louisiana State University, aganguly@lsu.edu
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, and Part-3.
- Joshua McGinnis University of Pennsylvania "Homogenization of a Spatially Extended, Stochastic Ion Channel Model"
- Radek Erban University of Oxford "Chemical Reaction Networks: Systematic Design, Limit Cycles and Spatio-Temporal Modelling"
- David Lipshutz Baylor College of Medicine "Methods for Comparing Sensitivities of Stochastic Neural Networks"
- TBA TBA "TBA"
Timeblock: MS07
MFBM-09
(Part 3)
Probability & stochastic processes in biology: models, methods, and community
Timeblock: MS07
MFBM-09
(Part 3)
Organized by: Jinsu Kim (POSTECH), Eric Foxall (The University of British Columbia - Okanagan Campus), and Linh Huynh (Dartmouth College)
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, Part-2, and Part-4.
- Hwai-Ray Tung University of Utah "Extreme first passage times with fast immigration"
Timeblock: MS07
MFBM-17
(Part 3)
Immune Digital Twins: Mathematical and Computational Foundations
Timeblock: MS07
MFBM-17
(Part 3)
Organized by: Tomas Helikar (University of Nebraska - Lincoln), Juilee Thakar (Juilee_Thakar@URMC.Rochester.edu) - University of Rochester Medical Center James Glazier (jaglazier@gmail.com) - Indiana University
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, and Part-2.
- Juilee Thakar University of Rochester "Monocyte digital twin and HIV associated vascular disease"
- Esteban Hernandez Vargas University of Idaho "Adaptive Observers in Digital Twins for Drug Resistance Mitigation in HIV"
- Heber L. Rocha Indiana University "Multiscale Modeling of Immune Surveillance for Cancer Patient Digital Twins"
- Gary An University of Vermont "NASEM-compliant Critical Illness Digital Twins to cure sepsis"
Timeblock: MS08
MFBM-07
(Part 3)
Stochastic Methods for Biochemical Reaction Networks
Timeblock: MS08
MFBM-07
(Part 3)
Organized by: Hye-Won Kang (University of Maryland Baltimore County), Arnab Ganguly, Louisiana State University, aganguly@lsu.edu
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, and Part-2.
- Suzanne Sindi University of California Merced "Scalable Bayesian Discovery of Chemical Reaction Networks from Fully Observed Stochastic Dynamics"
- Muruhan Rathinam University of Maryland Baltimore County "Stochastic Filtering of Reaction Networks"
- Arnab Ganguly Louisiana State University "Multiscale Enzyme Kinetic Reactions: Stochastic Averaging and Statistical Inference"
- Boseung Choi Korea University Sejong Campus "Statistical Inference Method for Identifying the Stochastic Chemical Kinetics Using Logistic Regression"
Timeblock: MS08
MFBM-09
(Part 4)
Probability & stochastic processes in biology: models, methods, and community
Timeblock: MS08
MFBM-09
(Part 4)
Organized by: Jinsu Kim (POSTECH), Eric Foxall (The University of British Columbia - Okanagan Campus), and Linh Huynh (Dartmouth College)
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, Part-2, and Part-3.
Note: this minisymposia has been accepted, but the abstracts have not yet been finalized.
Timeblock: MS08
MFBM-13
(Part 4)
Modern methods in the data-driven modeling of biological systems
Timeblock: MS08
MFBM-13
(Part 4)
Organized by: Cody FitzGerald (Northwestern University), Rainey Lyons (CU Boulder), Nora Heitzman-Breen (CU Boulder), Susan Rogowski (NCSU)
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, Part-2, and Part-3.
Note: this minisymposia has been accepted, but the abstracts have not yet been finalized.
Timeblock: MS08
MFBM-14
(Part 3)
Multicellular Agent-Based Modelling - The OpenVT Project
Timeblock: MS08
MFBM-14
(Part 3)
Organized by: James Osborne (University of Melbourne), James Glazier (Indiana University) Yi Jiang (Georgia State University)
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, and Part-2.
- James Glazier Indiana University, USA "OpenVT--Towards Making Virtual Tissue Models FAIR - Opportunities and Challenges"
- TJ Sego University of Florida, USA "Quantitative Reproducibility at Scale: A Federated, Standardizable Approach"
- Eran Agmon University of Connecticut, USA "Multicellular Schema with Vivarium"
- James Osborne University of Melbourne, AUSTRALIA "Multicellular Model Reproducibility: A case study, results from the Open VT hackathon"
Timeblock: MS09
MFBM-03
(Part 2)
Methods for whole cell modelling
Timeblock: MS09
MFBM-03
(Part 2)
Organized by: Jennifer Flegg (University of Melbourne), Prof Mat Simpson, Queensland University of Technology
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- Zan Luthey-Schulten University of Illinois at Urbana-Champaign "Bringing a cell to life on a computer and in Minecraft"
- Hilary Hunt Queensland University of Technology "Stress, stability, and systems biology: Modelling yeast’s mRNA panic rooms"
- Abigail Kushnir University of Edinburgh "Effective Mesoscopic Rate Equations for Spatial Stochastic Systems"
- Mica Yang Stanford University "Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses"
Timeblock: MS09
MFBM-08
(Part 2)
Mathematical methods for biological shape data analysis
Timeblock: MS09
MFBM-08
(Part 2)
Organized by: Wenjun Zhao (UBC/Wake Forest University), Khanh Dao Duc (UBC)
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- Laurent Younes JHU "Aligning measures using large deformation diffeomorphic mapping for spatial transcriptomics"
- Luis F Pereira UCSB "Statistical shape analysis with Geomstats"
- Qiyu Wang UBC "Studying SARS-CoV2 spike protein heterogeneity from large Cryo-EM dataset with linear subspace method and path analysis"
- Willem Diepeveen UCLA "Curvature corrected tangent space-based approximation of manifold-valued data and applications in protein dynamics analysis"
Timeblock: MS09
MFBM-10
(Part 2)
Flow-Kick Dynamics in Population Biology: Bridging Continuous and Discrete Processes
Timeblock: MS09
MFBM-10
(Part 2)
Organized by: Sebastian Schreiber (University of California, Davis)
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- Junping Shi College of William and Mary "Effect of rotational grazing on plant and animal production"
- Kate Meyers Carleton College "From deluges to drizzle: continuous limits of flow-kick models"
- Rebecca Tyson University of British Columbia, Okanagan "Host-parasitoid systems are vulnerable to extinction via P-tipping: Forest Tent Caterpillar as an example"
- Sebastian Schreiber University of California, Davis "Coexistence and extinction in flow kick systems via Lyapunov exponents"
Timeblock: MS09
MFBM-18
(Part 2)
Geometrical and Topological Methods for Data-Driven Modeling
Timeblock: MS09
MFBM-18
(Part 2)
Organized by: Dhananjay Bhaskar (Yale University), Bernadette Stolz-Pretzer
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- Eunbi Park Georgia Institute of Technology "Topological data analysis of pattern formation of human induced pluripotent stem cell colonies"
Sub-group contributed talks
Timeblock: CT01
MFBM-01
MFBM Subgroup Contributed Talks
Timeblock: CT01
MFBM-01
- Arianna Ceccarelli University of Oxford "A Bayesian inference framework to calibrate one-dimensional velocity-jump models for single-agent motion using discrete-time noisy data"
Timeblock: CT02
MFBM-01
MFBM Subgroup Contributed Talks
Timeblock: CT02
MFBM-01
- James Holehouse The Santa Fe Institute "The Origins of Transient Bimodality"
- Anthony Pasion Queen's University "Long-Lasting and Slowly Varying Transient Dynamics in Discrete-Time Systems"
- Elmar Bucher Indiana University / Intelligent Systems Engineering "PhysiGym : bridging the gap between the Gymnasium reinforcement learning application interface and the PhysiCell agent-based modeling framework"
Timeblock: CT03
MFBM-01
MFBM Subgroup Contributed Talks
Timeblock: CT03
MFBM-01
- Silvia Berra IRCCS Ospedale Policlinico San Martino, Genova, Italy "In-silico modeling of simple enzyme kinetics: from Michaelis-Menten to microscopic rate constants"
- Ismaila Muhammed Khalifa University "Data-driven Construction of Reduced Size Models Using Computational Singular Perturbation Method."
- John Vastola Harvard University "Bayesian inference of chemical reaction network parameters given reaction degeneracy: an approximate analytic solution"
- Adelle Coster School of Mathematics & Statistics, UNSW, Sydney Australia "Cellular protein transport: Queuing models and parameter estimation in stochastic systems"
- Clark Kendrick Go Collaborative Analytics Group, Department of Mathematics, Ateneo de Manila University "Exploring Mathematical Techniques in Collective Behaviour and Decision Making in Animal Groups"
Sub-group poster presentations
MFBM Posters