Viruses are the most numerically abundant biological entity in the ocean, and the success of viral infection is determined by the capacity of their microbial hosts to provide necessary macromolecular machinery to synthesize viral progeny. Stochastic processes governing the relative balance of the nucleic acid and protein production in the infected ‘virocell’ can disrupt viral replication and lead to the production of viral particles packaged with host, as opposed to viral, genomes. This talk will discuss a stochastic process model of viral infection informed by light availability (cellular energy input) that determine cell macromolecular production. We identify regimes under which different viral infection strategies prevail and compare them with known population distributions of marine bacteriophages. Latitudinal shifts in seasonality and average day length unveil a regime shift in viral infection efficacy that corresponds to a rapid restructuring of viral fitnesses, suggesting the sub cellular environment informs global-scale biogeographic trends in microbial pathogens in the ocean.
Minisymposia: MS09
Friday, July 18 at 3:50pm
Minisymposia: MS09
Timeblock: MS09
CDEV-04
The unexpected consequences of stochasticity in cell biology
Timeblock: MS09
CDEV-04
Organized by: James Holehouse (The Santa Fe Institute), Kaan Öcal (University of Melbourne) and Augustinas Sukys (University of Melbourne)
- Daniel Muratore Santa Fe Institute "Cellular Macromolecular Dynamics Induce Emergent Viral Biogeography in the Pacific Ocean"
- Anish Pandya UT Austin "Transcriptional noise tunes correlations between stages of the mRNA lifecycle"
- Ethan Levien Dartmouth College "Gene expression following abrupt antibiotic exposure"
- Lucy Ham University of Melbourne "Cell fate control in space and time: fundamental limits on spatial organisation in multicellular systems"
Timeblock: MS09
CDEV-08
Agent-based modelling of cell cytoskeletal phenomena
Timeblock: MS09
CDEV-08
Organized by: Eric Cytrynbaum (University of British Columbia), Tim Tian (University of British Columbia)
- Hannah Scanlon Duke University "Mechanisms of Microtubule Polarity Regulation in Neuronal Regeneration"
- Taeyoon Kim Purdue University "Reconstituting the Mechanical and Dynamic Behaviors of the Actin Cytoskeleton"
- Calina Copos Northeastern University "Modeling insights into actin cytoskeleton regulation with external size changes"
- Tim Y.Y. Tian University of British Columbia "Organization of Plant Cortical Microtubules"
Timeblock: MS09
ECOP-05
(Part 4)
Celebrating 60 Years of Excellence: Honoring Yang Kuang’s Contributions to Mathematical Biology
Timeblock: MS09
ECOP-05
(Part 4)
Organized by: Tin Phan (Los Alamos National Laboratory), Yun Kang (Arizona State University); Tracy Stepien (University of Florida)
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, Part-2, and Part-3.
- Bruce Pell Lawrence Technological University "Stability Switching Induced by Cross-Immunity in a Two-Strain Virus Competition Model with Wastewater Data Validation"
- Tianxu Wang University of Alberta "Derivations of Animal Movement Models with Explicit Memory"
- Lifeng Han Tulane University "A Simplified Model of Cancer Vaccine with Two Different Tumor-Immune Functional Responses"
- Tin Phan Los Alamos National Laboratory "The development and validation of a modeling framework for HIV treatment"
Timeblock: MS09
ECOP-11
How environmental changes can impact spatial growth and spread: From the small to large scale
Timeblock: MS09
ECOP-11
Organized by: Diana White (Clarkson University)
Note: this minisymposia has been accepted, but the abstracts have not yet been finalized.
Timeblock: MS09
IMMU-01
(Part 2)
New approaches to infectious disease immunity for model-informed vaccine development
Timeblock: MS09
IMMU-01
(Part 2)
Organized by: Terry Easlick (Univeristé de Montréal/Centre de recherche Azrieli du CHU Sainte-Justine), Morgan Craig, Univeristé de Montréal/Centre de recherche Azrieli du CHU Sainte-Justine
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- Mélanie Prague Université de Bordeaux/INRIA "Mechanistic Model of initial and persisting antibody response following Ebola vaccination: application to the PREVAC trial."
- Elizabeth Amona Virginia Commonwealth University "Studying Disease Reinfection Rates, Vaccine Efficacy and the Timing of Vaccine Rollout in the context of Infectious Diseases"
- Cailan Jeynes-Smith University of Tennessee Health Science Centre "Dissecting Cytokine Production: Integrating Subset-Specific Data into Immunological Models"
- Jonah Hall University of British Columbia/BC Children's Hospital Research Institute "Optimization of Pertussis Immunization Using Mathematical Modeling"
Timeblock: MS09
MEPI-02
(Part 2)
Modeling Complex Dynamics in Biological Processes: From Cellular Mechanics to Population-Level Dynamics
Timeblock: MS09
MEPI-02
(Part 2)
Organized by: Folashade B. Agusto (University of Kansas), Chidozie Williams Chukwu
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- Chidozie Williams Chukwu DePaul University, USA "Dynamic Multi-country Modeling for Forecasting and Controlling Tube"
- Hewan Shemtaga, Selim Sukhtaiev, and Dr. Wenxian Shen Auburn University, USA "Logistic Keller-Segel chemotaxis models on compact graphs"
- Ousmane Seydi University Le Havre, France "Growth Bounds and Threshold Dynamics in Periodic Structured Population Models"
- Daniel Cooney University of Illinois Urbana-Champaign, USA "Modeling Cross-Scale Evolutionary Dynamics"
Timeblock: MS09
MEPI-07
(Part 3)
Recent Trends in Mathematics of Vector-borne Diseases and Control
Timeblock: MS09
MEPI-07
(Part 3)
Organized by: Abba Gumel (University of Maryland), Alex Safsten, Arnaja Mitra (both University of Maryland)
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, and Part-2.
- Casey O'Brien North Carolina State University "Modeling a Novel Gene Drive That Targets Immune Responses"
- Jackson Champer Peking University "Suppression gene drive for mosquito control: large scale spatial models and impact on disease transmission"
Timeblock: MS09
MEPI-11
(Part 3)
Advances in infectious disease modelling: towards a unifying framework to support the needs of small and large jurisdictions
Timeblock: MS09
MEPI-11
(Part 3)
Organized by: Amy Hurford (Memorial University), Michael Li, Public Health Agency of Canada
Note: this minisymposia has multiple sessions. The other sessions are: Part-1, and Part-2.
- Wade McDonald University of Saskatchewan "Use of Synthetic Data to Improve Wastewater-based Epidemiological Models in a Small Jurisdiction"
- Matthew Betti Mount Allison University "Modeling healthcare demand during a disease outbreak"
- Sicheng Zhao McMaster University "Edge-based Modeling for Disease Transmission on Random Graphs – an Application to Mitigate a Syphilis Outbreak"
- Caroline Mburu British Columbia Centre for Disease Control/Simon Fraser University "Wastewater-based modelling for Mpox surveillance among gbMSM in BC"
Timeblock: MS09
MFBM-03
(Part 2)
Methods for whole cell modelling
Timeblock: MS09
MFBM-03
(Part 2)
Organized by: Jennifer Flegg (University of Melbourne), Prof Mat Simpson, Queensland University of Technology
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- Zan Luthey-Schulten University of Illinois at Urbana-Champaign "Bringing a cell to life on a computer and in Minecraft"
- Hilary Hunt Queensland University of Technology "Stress, stability, and systems biology: Modelling yeast’s mRNA panic rooms"
- Abigail Kushnir University of Edinburgh "Effective Mesoscopic Rate Equations for Spatial Stochastic Systems"
- Mica Yang Stanford University "Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses"
Timeblock: MS09
MFBM-08
(Part 2)
Mathematical methods for biological shape data analysis
Timeblock: MS09
MFBM-08
(Part 2)
Organized by: Wenjun Zhao (UBC/Wake Forest University), Khanh Dao Duc (UBC)
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- Laurent Younes JHU "Aligning measures using large deformation diffeomorphic mapping for spatial transcriptomics"
- Luis F Pereira UCSB "Statistical shape analysis with Geomstats"
- Qiyu Wang UBC "Studying SARS-CoV2 spike protein heterogeneity from large Cryo-EM dataset with linear subspace method and path analysis"
- Willem Diepeveen UCLA "Curvature corrected tangent space-based approximation of manifold-valued data and applications in protein dynamics analysis"
Timeblock: MS09
MFBM-10
(Part 2)
Flow-Kick Dynamics in Population Biology: Bridging Continuous and Discrete Processes
Timeblock: MS09
MFBM-10
(Part 2)
Organized by: Sebastian Schreiber (University of California, Davis)
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- Junping Shi College of William and Mary "Effect of rotational grazing on plant and animal production"
- Kate Meyers Carleton College "From deluges to drizzle: continuous limits of flow-kick models"
- Rebecca Tyson University of British Columbia, Okanagan "Host-parasitoid systems are vulnerable to extinction via P-tipping: Forest Tent Caterpillar as an example"
- Sebastian Schreiber University of California, Davis "Coexistence and extinction in flow kick systems via Lyapunov exponents"
Timeblock: MS09
MFBM-18
(Part 2)
Geometrical and Topological Methods for Data-Driven Modeling
Timeblock: MS09
MFBM-18
(Part 2)
Organized by: Dhananjay Bhaskar (Yale University), Bernadette Stolz-Pretzer
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- Eunbi Park Georgia Institute of Technology "Topological data analysis of pattern formation of human induced pluripotent stem cell colonies"
Timeblock: MS09
ONCO-03
(Part 2)
MathOnco Subgroup Mini-Symposium: At the Interface of Modeling and Machine Learning
Timeblock: MS09
ONCO-03
(Part 2)
Organized by: Jana Gevertz (The College of New Jersey), Thomas Hillen (University of Alberta), Linh Huynh (Dartmouth College)
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- John Metzcar University of Minnesota "Evaluation of mechanistic and machine learning modeling approaches for glioblastoma recurrence prediction using white blood cell dynamics"
- Lena Podina University of Waterloo "Universal Physics-Informed Neural Networks and Their Applications"
- Kit Gallagher University of Oxford, Moffitt Cancer Center "Predicting Treatment Outcomes from Adaptive Therapy — A New Mathematical Biomarker"
Timeblock: MS09
ONCO-07
(Part 2)
Dynamical modeling of cell-state transitions in cancer therapy resistance
Timeblock: MS09
ONCO-07
(Part 2)
Organized by: Mohit Kumar Jolly (Indian Institute of Science), Sarthak Sahoo (Indian Institute of Science)
Note: this minisymposia has multiple sessions. The other session is: and Part-1.
- David P Cook Ottawa Hospital Research Institute "Phenotypic constraints in ovarian cancer - a new perspective on targeted therapy"
- Jill Gallaher Moffitt Cancer Center "Dynamic evolvability during tumor growth and treatment"
- Cordelia McGehee Mayo Clinic " Chemotherapy dosing as a driver of population evolution in models of intra-tumoral cell-cell competition in cancer"
- Russell C Rockne Beckman Research Institute, City of Hope "State-transitions at the single cell and system levels in chronic and acute myeloid leukemia"
Timeblock: MS09
OTHE-05
Design Principles of Biological Networks
Timeblock: MS09
OTHE-05
Organized by: Kishore Hari and Pradyumna Harlapur (Postdoctoral Research Fellow, Center for Theoretical Biological Physics), Pradyumna Harlapur, PhD Candidate, Dept. of BioEngineering, Indian Institute of Science
Note: this minisymposia has been accepted, but the abstracts have not yet been finalized.